| #10 |
Maintain strict separation of concerns (i.e., UI independence)
|
assigned
|
curtis
|
feature
|
blocker
|
imagej-2.0.0
|
| #777 |
Some images render differently in IJ2
|
assigned
|
curtis
|
defect
|
blocker
|
imagej-2.0.0-beta3
|
| #878 |
Support "subtracting" ROIs
|
accepted
|
dscho
|
feature
|
blocker
|
imagej-2.0.0-beta3
|
| #1010 |
Full backwards compatibility with ImageJ1
|
new
|
bdezonia
|
feature
|
blocker
|
imagej-2.0.0
|
| #1011 |
Robust ImageJ1 legacy layer
|
new
|
bdezonia
|
feature
|
blocker
|
imagej-2.0.0
|
| #1012 |
Better unit testing of core ImageJ2 classes
|
new
|
bdezonia
|
feature
|
blocker
|
imagej-2.0.0
|
| #1015 |
Thoroughly document ImageJ2 API
|
new
|
curtis
|
feature
|
blocker
|
imagej-2.0.0
|
| #1016 |
Ensure all ImageJ1 functionality is available in ImageJ2
|
new
|
curtis
|
feature
|
blocker
|
imagej-2.0.0
|
| #9 |
Redesign core I/O infrastructure
|
new
|
curtis
|
feature
|
critical
|
imagej-2.0.0-beta4
|
| #12 |
Redesign scripting infrastructure
|
accepted
|
dscho
|
feature
|
critical
|
imagej-2.0.0-beta4
|
| #100 |
Bio-Formats core library split
|
accepted
|
curtis
|
task
|
critical
|
imagej-2.0.0-beta3
|
| #216 |
New ImgLib container types for use with imglib-io
|
accepted
|
curtis
|
task
|
critical
|
imagej-2.0.0-beta4
|
| #376 |
Support for checkbox menu items
|
accepted
|
curtis
|
enhancement
|
critical
|
imagej-2.0.0-beta3
|
| #406 |
Make a new About dialog
|
assigned
|
bdezonia
|
task
|
critical
|
imagej-2.0.0-beta4
|
| #432 |
Remove requirement that Axes[0] == X && Axes[1] == Y
|
new
|
bdezonia
|
task
|
critical
|
imagej-2.5.0
|
| #582 |
Better support for selections (e.g., for Crop plugin)
|
accepted
|
dscho
|
defect
|
critical
|
imagej-2.0.0-beta3
|
| #629 |
Image Type not checked for newly opened images
|
accepted
|
curtis
|
defect
|
critical
|
imagej-2.0.0-beta3
|
| #660 |
Improve Display-DisplayView-DataObject hierarchy
|
accepted
|
curtis
|
defect
|
critical
|
imagej-2.0.0-beta3
|
| #833 |
Write tests for legacy layer
|
new
|
bdezonia
|
task
|
critical
|
imagej-2.0.0-beta4
|
| #837 |
BeanShell-based IJ2 macro language
|
accepted
|
dscho
|
task
|
critical
|
imagej-2.0.0-beta4
|
| #884 |
Decouple data events from display classes
|
accepted
|
curtis
|
defect
|
critical
|
imagej-2.0.0-beta3
|
| #999 |
Improve ImgLib documentation
|
new
|
curtis
|
task
|
critical
|
imagej-2.0.0
|
| #1019 |
Reimplement IJ1 features that the legacy layer cannot support
|
new
|
bdezonia
|
feature
|
critical
|
imagej-2.0.0
|
| #1051 |
Improve plugin infrastructure (2.0.0-beta3)
|
new
|
curtis
|
feature
|
critical
|
imagej-2.0.0-beta3
|
| #1052 |
Improve plugin infrastructure (2.0.0-beta4)
|
new
|
curtis
|
feature
|
critical
|
imagej-2.0.0-beta4
|
| #1053 |
Improve plugin infrastructure (2.0.0-final)
|
new
|
curtis
|
feature
|
critical
|
imagej-2.0.0
|
| #1055 |
Improve plugin infrastructure (2.5.0)
|
new
|
curtis
|
feature
|
critical
|
imagej-2.5.0
|
| #1128 |
Unify ImgLib2 Histogram implementations
|
new
|
curtis
|
task
|
critical
|
imagej-2.0.0-beta3
|
| #1162 |
Improve menuing system
|
new
|
bdezonia
|
feature
|
critical
|
imagej-2.0.0-beta3
|
| #8 |
Extend ImageJ's image metadata model
|
new
|
curtis
|
feature
|
major
|
imagej-2.5.0
|
| #13 |
Improve undo/redo functionality
|
accepted
|
curtis
|
feature
|
major
|
imagej-2.0.0-beta3
|
| #19 |
Efficient support for very large image planes
|
reopened
|
aivar
|
feature
|
major
|
imagej-2.5.0
|
| #20 |
Efficient support for very large image data
|
assigned
|
curtis
|
feature
|
major
|
imagej-2.0.0-beta4
|
| #21 |
Support for data source abstraction
|
reopened
|
aivar
|
feature
|
major
|
imagej-2.0.0
|
| #31 |
Central plugins repository
|
new
|
curtis
|
feature
|
major
|
imagej-2.0.0
|
| #32 |
Plugin self-documentation mechanism
|
new
|
curtis
|
feature
|
major
|
imagej-2.0.0
|
| #33 |
RFP mechanism
|
new
|
curtis
|
feature
|
major
|
imagej-2.0.0
|
| #34 |
Integrate basic VisBio functionality
|
new
|
curtis
|
feature
|
major
|
imagej-2.0.0
|
| #35 |
Analysis pipelines
|
assigned
|
aivar
|
feature
|
major
|
imagej-2.5.0
|
| #37 |
Localization/internationalization
|
accepted
|
curtis
|
feature
|
major
|
imagej-2.0.0
|
| #43 |
Tiled browser interface
|
new
|
curtis
|
feature
|
major
|
imagej-2.5.0
|
| #44 |
Support for multi-view spectral lifetime visualization
|
new
|
aivar
|
feature
|
major
|
imagej-2.5.0
|
| #45 |
Integrate OMERO with ImageJ
|
assigned
|
curtis
|
feature
|
major
|
imagej-2.0.0
|
| #101 |
Update Bio-Formats in VisAD repository
|
new
|
curtis
|
task
|
major
|
imagej-2.0.0-beta3
|
| #102 |
Contact ITK community regarding bf-core library split
|
new
|
curtis
|
task
|
major
|
imagej-2.0.0-beta3
|
| #120 |
Prototype App. on NetBeans Platform
|
reopened
|
gharris
|
feature
|
major
|
imagej-2.5.0
|
| #143 |
Explore use of OSGi
|
new
|
curtis
|
task
|
major
|
imagej-3.0.0
|
| #171 |
Test jar2lib with latest Jace revision
|
new
|
curtis
|
task
|
major
|
imagej-2.0.0
|
| #285 |
Improve support for ROIs, segmentation and labeling (2.0.0-beta4)
|
assigned
|
curtis
|
feature
|
major
|
imagej-2.0.0-beta4
|
| #329 |
Example Plugin for Envisaje
|
new
|
curtis
|
enhancement
|
major
|
imagej-2.5.0
|
| #330 |
Example Extension for Envisaje Platform
|
new
|
curtis
|
enhancement
|
major
|
imagej-2.5.0
|
| #351 |
Copy/Paste functionality
|
new
|
curtis
|
feature
|
major
|
imagej-2.0.0-beta4
|
| #352 |
Define ROIs & Selections in relation to Img's
|
accepted
|
leek
|
task
|
major
|
imagej-2.0.0-beta4
|
| #358 |
Work on keystroke acceleration for IJ2
|
accepted
|
bdezonia
|
task
|
major
|
imagej-2.0.0
|
| #366 |
Combine Options into a single tabbed dialog
|
assigned
|
curtis
|
task
|
major
|
imagej-2.0.0-beta4
|
| #367 |
Update LOCI repositories and Tracs
|
new
|
curtis
|
task
|
major
|
imagej-2.0.0-beta4
|
| #389 |
Be able to pull data out of a Dataset without precision loss
|
new
|
bdezonia
|
defect
|
major
|
imagej-2.0.0
|
| #391 |
Handle case of choosing among multiple display plugins for a single Dataset
|
new
|
bdezonia
|
task
|
major
|
imagej-2.0.0-beta4
|
| #399 |
Reenable navigation preview image functionality
|
new
|
curtis
|
task
|
major
|
imagej-2.0.0-beta3
|
| #436 |
Closing IJ2 can be annoying
|
new
|
bdezonia
|
defect
|
major
|
imagej-2.0.0
|
| #438 |
Problems with loading big images
|
new
|
curtis
|
defect
|
major
|
imagej-2.0.0-beta4
|
| #441 |
Implement IJ1's Window menu functionality
|
assigned
|
curtis
|
feature
|
major
|
imagej-2.0.0-beta3
|
| #444 |
Improve how the Display framework handles large images
|
new
|
bdezonia
|
task
|
major
|
imagej-2.0.0-beta4
|
| #445 |
Add unit support to IJ2 as needed
|
assigned
|
curtis
|
task
|
major
|
imagej-2.0.0-beta4
|
| #466 |
Zoom To Original Scale: resize panel if needed
|
assigned
|
curtis
|
enhancement
|
major
|
imagej-2.0.0-beta3
|
| #476 |
ZoomTool: zoom to dragged rectangle slightly panned
|
new
|
bdezonia
|
defect
|
major
|
imagej-2.0.0-beta3
|
| #478 |
Update Imglib performance benchmarks
|
new
|
bdezonia
|
task
|
major
|
imagej-2.0.0-beta4
|
| #480 |
Add Tool Configuration Annotation
|
new
|
curtis
|
enhancement
|
major
|
imagej-2.0.0-beta3
|
| #485 |
Apply Plugin Operation to Stack
|
new
|
curtis
|
enhancement
|
major
|
imagej-2.0.0-beta4
|
| #490 |
Image Properties Editor
|
new
|
bdezonia
|
enhancement
|
major
|
imagej-2.0.0-beta4
|
| #509 |
Determine how to approach legacy Image::Type menu plugins
|
new
|
curtis
|
task
|
major
|
imagej-2.0.0-beta4
|
| #516 |
Add arbitrary properties to Metadata
|
assigned
|
curtis
|
task
|
major
|
imagej-2.0.0-beta3
|
| #531 |
Legacy layer has limitations in regard to plugins that change data types
|
accepted
|
bdezonia
|
enhancement
|
major
|
imagej-2.0.0
|
| #536 |
Decide on ROI Persistence Mechanism
|
assigned
|
bdezonia
|
enhancement
|
major
|
imagej-2.0.0-beta3
|
| #537 |
Update ROIs correctly in DatasetHarmonizer
|
accepted
|
leek
|
enhancement
|
major
|
imagej-2.0.0-beta4
|
| #546 |
Minimize time spent harmonizing Datasets/ImagePluses
|
new
|
bdezonia
|
task
|
major
|
imagej-2.0.0-beta4
|
| #549 |
Improve legacy support of bit typed data
|
new
|
bdezonia
|
task
|
major
|
imagej-2.0.0-beta4
|
| #552 |
Make it possible to pass a ImgFactory to ImageTranslator::createDataset()
|
new
|
bdezonia
|
task
|
major
|
imagej-2.0.0-beta4
|
| #557 |
Add permanent caching support to ImgIOUtils
|
new
|
curtis
|
enhancement
|
major
|
imagej-2.0.0-beta3
|
| #559 |
The legacy layer only supports 8-bit ColorTables
|
assigned
|
curtis
|
task
|
major
|
imagej-2.0.0-beta4
|
| #560 |
Performance improve Import BioFormats
|
new
|
curtis
|
task
|
major
|
imagej-2.0.0-beta4
|
| #564 |
Write pure IJ2 version of Image :: Show Info menu item
|
new
|
bdezonia
|
task
|
major
|
imagej-2.0.0-beta4
|
| #573 |
Composite image info lost sometimes
|
assigned
|
curtis
|
defect
|
major
|
imagej-2.0.0-beta3
|
| #578 |
IJ1 Channels Tool does not work
|
new
|
curtis
|
defect
|
major
|
imagej-2.0.0-beta3
|
| #579 |
Support for multiple datasets in the same display
|
new
|
curtis
|
feature
|
major
|
imagej-2.0.0-beta3
|
| #583 |
Smarter memory management/detection
|
new
|
curtis
|
enhancement
|
major
|
imagej-2.0.0-beta3
|
| #586 |
Exception thrown on type convert to RGB Color
|
assigned
|
curtis
|
defect
|
major
|
imagej-2.0.0-beta3
|
| #593 |
File :: New Image enhancement needed
|
new
|
curtis
|
task
|
major
|
imagej-2.0.0-beta4
|
| #607 |
Maintain ColorTables when modifying Datasets
|
assigned
|
bdezonia
|
defect
|
major
|
imagej-2.0.0-beta4
|
| #611 |
Combine Add Axis with Add Data (and Delete cases also)?
|
new
|
bdezonia
|
task
|
major
|
imagej-2.0.0-beta4
|
| #612 |
Image :: Stacks :: Orthogonal Views plugin does nothing
|
new
|
bdezonia
|
defect
|
major
|
imagej-2.0.0-beta3
|
| #625 |
Hotkey problems in IJ2
|
reopened
|
curtis
|
defect
|
major
|
imagej-2.5.0
|
| #627 |
Rotating image can cause window size to be wrong
|
accepted
|
curtis
|
defect
|
major
|
imagej-2.0.0-beta3
|
| #652 |
Thoroughly test legacy layer
|
accepted
|
curtis
|
task
|
major
|
imagej-2.0.0-beta3
|
| #658 |
Add ability to limit which proxies are generated
|
new
|
curtis
|
enhancement
|
major
|
imagej-2.0.0-beta4
|
| #659 |
Prototype for Bio-Formats Ice bindings
|
new
|
curtis
|
task
|
major
|
imagej-2.0.0-beta4
|
| #661 |
Extend pixel types supported to include INT64
|
new
|
curtis
|
defect
|
major
|
imagej-2.0.0-beta4
|
| #693 |
ij.gui.Overlay not tracked in legacy layer
|
new
|
curtis
|
defect
|
major
|
imagej-2.0.0-beta3
|
| #716 |
ProbeTool cursor is off
|
accepted
|
curtis
|
defect
|
major
|
imagej-2.0.0-beta3
|
| #720 |
IJ2 Open command sets LUTs incorrectly
|
accepted
|
curtis
|
defect
|
major
|
imagej-2.0.0-beta3
|