|
#10
|
Maintain strict separation of concerns (i.e., UI independence)
|
ij-core
|
|
imagej-2.0.0
|
feature
|
curtis
|
assigned
|
02/15/10
|
|
#1010
|
Full backwards compatibility with ImageJ1
|
ij-legacy
|
|
imagej-2.0.0
|
feature
|
bdezonia
|
new
|
02/24/12
|
|
#1011
|
Robust ImageJ1 legacy layer
|
ij-legacy
|
|
imagej-2.0.0
|
feature
|
bdezonia
|
new
|
02/24/12
|
|
#1012
|
Better unit testing of core ImageJ2 classes
|
tests
|
|
imagej-2.0.0
|
feature
|
bdezonia
|
new
|
02/24/12
|
|
#1015
|
Thoroughly document ImageJ2 API
|
community
|
|
imagej-2.0.0
|
feature
|
curtis
|
new
|
02/24/12
|
|
#1016
|
Ensure all ImageJ1 functionality is available in ImageJ2
|
ij-core
|
|
imagej-2.0.0
|
feature
|
curtis
|
new
|
02/24/12
|
|
#777
|
Some images render differently in IJ2
|
ij-display
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
09/22/11
|
|
#878
|
Support "subtracting" ROIs
|
ij-core
|
|
imagej-2.0.0-beta3
|
feature
|
dscho
|
accepted
|
11/21/11
|
|
#1019
|
Reimplement IJ1 features that the legacy layer cannot support
|
ij-plugins
|
|
imagej-2.0.0
|
feature
|
bdezonia
|
new
|
02/26/12
|
|
#1053
|
Improve plugin infrastructure (2.0.0-final)
|
ij-ext
|
|
imagej-2.0.0
|
feature
|
curtis
|
new
|
03/05/12
|
|
#999
|
Improve ImgLib documentation
|
community
|
|
imagej-2.0.0
|
task
|
curtis
|
new
|
02/22/12
|
|
#582
|
Better support for selections (e.g., for Crop plugin)
|
ij-display
|
|
imagej-2.0.0-beta3
|
defect
|
dscho
|
accepted
|
06/08/11
|
|
#629
|
Image Type not checked for newly opened images
|
ij-core
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
accepted
|
06/21/11
|
|
#660
|
Improve Display-DisplayView-DataObject hierarchy
|
ij-display
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
accepted
|
07/05/11
|
|
#884
|
Decouple data events from display classes
|
ij-display
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
accepted
|
11/22/11
|
|
#376
|
Support for checkbox menu items
|
ij-ext
|
|
imagej-2.0.0-beta3
|
enhancement
|
curtis
|
accepted
|
03/17/11
|
|
#1051
|
Improve plugin infrastructure (2.0.0-beta3)
|
ij-ext
|
|
imagej-2.0.0-beta3
|
feature
|
curtis
|
new
|
03/05/12
|
|
#1162
|
Improve menuing system
|
ij-ext
|
|
imagej-2.0.0-beta3
|
feature
|
bdezonia
|
new
|
05/09/12
|
|
#100
|
Bio-Formats core library split
|
ij-io
|
|
imagej-2.0.0-beta3
|
task
|
curtis
|
accepted
|
06/22/10
|
|
#1128
|
Unify ImgLib2 Histogram implementations
|
imglib
|
2.0.0-beta1
|
imagej-2.0.0-beta3
|
task
|
curtis
|
new
|
04/19/12
|
|
#9
|
Redesign core I/O infrastructure
|
ij-io
|
|
imagej-2.0.0-beta4
|
feature
|
curtis
|
new
|
02/15/10
|
|
#12
|
Redesign scripting infrastructure
|
ij-script
|
|
imagej-2.0.0-beta4
|
feature
|
dscho
|
accepted
|
02/16/10
|
|
#1052
|
Improve plugin infrastructure (2.0.0-beta4)
|
ij-ext
|
|
imagej-2.0.0-beta4
|
feature
|
curtis
|
new
|
03/05/12
|
|
#216
|
New ImgLib container types for use with imglib-io
|
ij-io
|
|
imagej-2.0.0-beta4
|
task
|
curtis
|
accepted
|
09/20/10
|
|
#406
|
Make a new About dialog
|
ij-ui
|
|
imagej-2.0.0-beta4
|
task
|
bdezonia
|
assigned
|
03/29/11
|
|
#833
|
Write tests for legacy layer
|
ij-legacy
|
|
imagej-2.0.0-beta4
|
task
|
bdezonia
|
new
|
10/18/11
|
|
#837
|
BeanShell-based IJ2 macro language
|
ij-script
|
|
imagej-2.0.0-beta4
|
task
|
dscho
|
accepted
|
10/20/11
|
|
#1055
|
Improve plugin infrastructure (2.5.0)
|
ij-ext
|
|
imagej-2.5.0
|
feature
|
curtis
|
new
|
03/05/12
|
|
#432
|
Remove requirement that Axes[0] == X && Axes[1] == Y
|
ij-core
|
|
imagej-2.5.0
|
task
|
bdezonia
|
new
|
04/06/11
|
|
#389
|
Be able to pull data out of a Dataset without precision loss
|
ij-data-model
|
|
imagej-2.0.0
|
defect
|
bdezonia
|
new
|
03/22/11
|
|
#436
|
Closing IJ2 can be annoying
|
ij-display
|
|
imagej-2.0.0
|
defect
|
bdezonia
|
new
|
04/08/11
|
|
#727
|
Imglib OPs finishing touches
|
ij-core
|
|
imagej-2.0.0
|
defect
|
bdezonia
|
new
|
08/16/11
|
|
#1158
|
Import Image Sequence behavior is confusing
|
ij-io
|
2.0.0-beta1
|
imagej-2.0.0
|
defect
|
curtis
|
new
|
05/08/12
|
|
#531
|
Legacy layer has limitations in regard to plugins that change data types
|
ij-legacy
|
|
imagej-2.0.0
|
enhancement
|
bdezonia
|
accepted
|
05/20/11
|
|
#729
|
Imglib OPS enhancement ideas
|
imglib
|
|
imagej-2.0.0
|
enhancement
|
bdezonia
|
new
|
08/17/11
|
|
#819
|
Make a general case crop plugin
|
ij-plugins
|
|
imagej-2.0.0
|
enhancement
|
bdezonia
|
new
|
10/12/11
|
|
#991
|
Mavenize Fiji
|
other
|
|
imagej-2.0.0
|
enhancement
|
dscho
|
accepted
|
02/21/12
|
|
#1023
|
Detect when sezpoz was not run properly (e.g. when compiled in Eclipse)
|
ij-ext
|
|
imagej-2.0.0
|
enhancement
|
dscho
|
accepted
|
02/27/12
|
|
#1024
|
File>New>Plugin (Eclipse)
|
ij-plugins
|
|
imagej-2.0.0
|
enhancement
|
dscho
|
new
|
02/27/12
|
|
#1041
|
Make Histogram implement ImgLib2 interfaces
|
imglib
|
|
imagej-2.0.0
|
enhancement
|
curtis
|
new
|
03/01/12
|
|
#1063
|
ImgPlus should wrap any RandomAccessibleInterval
|
imglib
|
|
imagej-2.0.0
|
enhancement
|
curtis
|
new
|
03/08/12
|
|
#21
|
Support for data source abstraction
|
imglib
|
|
imagej-2.0.0
|
feature
|
aivar
|
reopened
|
02/18/10
|
|
#31
|
Central plugins repository
|
community
|
|
imagej-2.0.0
|
feature
|
curtis
|
new
|
02/19/10
|
|
#32
|
Plugin self-documentation mechanism
|
ij-ext
|
|
imagej-2.0.0
|
feature
|
curtis
|
new
|
02/19/10
|
|
#33
|
RFP mechanism
|
community
|
|
imagej-2.0.0
|
feature
|
curtis
|
new
|
02/24/10
|
|
#34
|
Integrate basic VisBio functionality
|
visbio
|
|
imagej-2.0.0
|
feature
|
curtis
|
new
|
02/24/10
|
|
#37
|
Localization/internationalization
|
ij-ui
|
|
imagej-2.0.0
|
feature
|
curtis
|
accepted
|
02/24/10
|
|
#45
|
Integrate OMERO with ImageJ
|
ij-analysis
|
|
imagej-2.0.0
|
feature
|
curtis
|
assigned
|
03/01/10
|
|
#1001
|
Interoperability between ImageJ and other software
|
other
|
|
imagej-2.0.0
|
feature
|
curtis
|
new
|
02/23/12
|
|
#1002
|
Interoperability between ImageJ and CellProfiler
|
other
|
|
imagej-2.0.0
|
feature
|
curtis
|
new
|
02/23/12
|
|
#1003
|
Interoperability between ImageJ and OMERO
|
other
|
|
imagej-2.0.0
|
feature
|
curtis
|
new
|
02/23/12
|
|
#1004
|
Interoperability between ImageJ and KNIME
|
other
|
|
imagej-2.0.0
|
feature
|
curtis
|
new
|
02/23/12
|
|
#1005
|
Interoperability between ImageJ and ICY
|
other
|
|
imagej-2.0.0
|
feature
|
curtis
|
new
|
02/23/12
|
|
#1006
|
Interoperability between ImageJ and ITK
|
other
|
|
imagej-2.0.0
|
feature
|
curtis
|
new
|
02/23/12
|
|
#1008
|
Migrate infrastructure from Fiji to ImageJ2
|
other
|
|
imagej-2.0.0
|
feature
|
dscho
|
accepted
|
02/24/12
|
|
#1009
|
Migrate SLIM Plugin to ImageJ2
|
slim
|
|
imagej-2.0.0
|
feature
|
aivar
|
new
|
02/24/12
|
|
#171
|
Test jar2lib with latest Jace revision
|
jar2lib
|
|
imagej-2.0.0
|
task
|
curtis
|
new
|
08/26/10
|
|
#358
|
Work on keystroke acceleration for IJ2
|
ij-ui
|
|
imagej-2.0.0
|
task
|
bdezonia
|
accepted
|
03/11/11
|
|
#822
|
Integrate dimensions, axes, calibration, etc.
|
ij-data-model
|
|
imagej-2.0.0
|
task
|
curtis
|
new
|
10/12/11
|
|
#978
|
Update display mechanism for complex data
|
ij-display
|
|
imagej-2.0.0
|
task
|
curtis
|
new
|
02/15/12
|
|
#1133
|
Compatibility with JIST
|
ij-plugins
|
|
imagej-2.0.0
|
task
|
curtis
|
new
|
04/20/12
|
|
#476
|
ZoomTool: zoom to dragged rectangle slightly panned
|
ij-ui
|
|
imagej-2.0.0-beta3
|
defect
|
bdezonia
|
new
|
04/29/11
|
|
#573
|
Composite image info lost sometimes
|
ij-legacy
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
06/07/11
|
|
#578
|
IJ1 Channels Tool does not work
|
ij-ui
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
new
|
06/08/11
|
|
#586
|
Exception thrown on type convert to RGB Color
|
ij-ui
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
06/08/11
|
|
#612
|
Image :: Stacks :: Orthogonal Views plugin does nothing
|
ij-core
|
|
imagej-2.0.0-beta3
|
defect
|
bdezonia
|
new
|
06/16/11
|
|
#627
|
Rotating image can cause window size to be wrong
|
ij-ui
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
accepted
|
06/21/11
|
|
#693
|
ij.gui.Overlay not tracked in legacy layer
|
bio-formats
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
new
|
07/27/11
|
|
#716
|
ProbeTool cursor is off
|
ij-tool
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
accepted
|
08/04/11
|
|
#720
|
IJ2 Open command sets LUTs incorrectly
|
ij-io
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
accepted
|
08/10/11
|
|
#749
|
Window menu bug
|
ij-ui
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
accepted
|
09/13/11
|
|
#756
|
Threshold broken
|
ij-legacy
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
09/16/11
|
|
#761
|
Selection > Make Inverse throws exception
|
ij-legacy
|
|
imagej-2.0.0-beta3
|
defect
|
dscho
|
assigned
|
09/16/11
|
|
#770
|
Image renders differently in IJ1 & IJ2
|
ij-display
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
09/21/11
|
|
#794
|
16 bit images should auto scale on load
|
other
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
09/26/11
|
|
#796
|
Brightness/Contrast "auto" works differently than IJ1
|
ij-legacy
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
09/26/11
|
|
#798
|
Zooming out can result in drift
|
ij-ui
|
|
imagej-2.0.0-beta3
|
defect
|
dscho
|
new
|
09/26/11
|
|
#799
|
IJ2 Convert to Mask throws exception
|
ij-ui
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
09/26/11
|
|
#802
|
Imglib can hang up when memory is low
|
imglib
|
|
imagej-2.0.0-beta3
|
defect
|
bdezonia
|
new
|
10/04/11
|
|
#804
|
Allow plugins to cancel themselves
|
ij-ext
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
10/05/11
|
|
#818
|
Overlays do not interact well with crop
|
ij-plugins
|
|
imagej-2.0.0-beta3
|
defect
|
bdezonia
|
new
|
10/12/11
|
|
#826
|
Crop does not always resize window
|
ij-display
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
accepted
|
10/14/11
|
|
#858
|
Determine correct menu location for script options plugin
|
ij-plugins
|
|
imagej-2.0.0-beta3
|
defect
|
dscho
|
new
|
11/01/11
|
|
#871
|
Image > Zoom > Set... plugin does not always pan over center
|
ij-display
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
11/15/11
|
|
#875
|
Exception thrown when creating overlays
|
ij-data-model
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
new
|
11/17/11
|
|
#891
|
IJ1 context menu is unavailable in IJ2
|
ij-ui
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
11/28/11
|
|
#903
|
Implement Window/Level Adjustment Plugin
|
ij-display
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
new
|
12/05/11
|
|
#904
|
Implement Threshold Plugin
|
ij-display
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
new
|
12/05/11
|
|
#912
|
Exception when running Image > Type > 8-bit color
|
ij-ui
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
new
|
12/10/11
|
|
#919
|
App menu not available in Linux
|
ij-ui
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
01/24/12
|
|
#922
|
Overlay tools: right click can create tiny anomaly
|
ij-ui
|
|
imagej-2.0.0-beta3
|
defect
|
bdezonia
|
new
|
01/30/12
|
|
#933
|
Adding overlays can zoom inappropriately
|
ij-ui
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
02/03/12
|
|
#934
|
Drawing overlay changes tool focus
|
ij-tool
|
|
imagej-2.0.0-beta3
|
defect
|
dscho
|
assigned
|
02/03/12
|
|
#936
|
Window menu does not pull image to front
|
ij-ui
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
02/03/12
|
|
#960
|
One of the Line Width ... plugins does nothing
|
ij-plugins
|
|
imagej-2.0.0-beta3
|
defect
|
bdezonia
|
new
|
02/09/12
|
|
#961
|
Add/delete axis/data plugins mislocated?
|
ij-plugins
|
|
imagej-2.0.0-beta3
|
defect
|
bdezonia
|
new
|
02/09/12
|
|
#962
|
Image Rotate and Translate plugins less functional
|
ij-core
|
|
imagej-2.0.0-beta3
|
defect
|
bdezonia
|
new
|
02/09/12
|
|
#964
|
Make Binary broken
|
ij-legacy
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
assigned
|
02/09/12
|
|
#969
|
Composite images interact poorly with overlay drawing
|
ij-display
|
|
imagej-2.0.0-beta3
|
defect
|
curtis
|
new
|
02/09/12
|
|
#973
|
Roi manager functionality
|
ij-legacy
|
|
imagej-2.0.0-beta3
|
defect
|
bdezonia
|
new
|
02/13/12
|