20090215T003449: *: <== :gitte!n=gene099@pD9EB0873.dip0.t-ipconnect.de JOIN :#fiji-devel 20090215T005316: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br QUIT :Read error: 54 (Connection reset by peer) 20090215T005805: *: <== :gitte!n=gene099@pD9EB0873.dip0.t-ipconnect.de QUIT :Remote closed the connection 20090215T145424: *: <== :oosp!n=oosp@wiggle.inf.ed.ac.uk JOIN :#fiji-devel 20090215T160154: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br JOIN :#fiji-devel 20090215T160222: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :Hello can you guys help me with something? 20090215T160222: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: Hello can you guys help me with something? 20090215T160300: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :I am trying to modify a macro, but my editing makes no difference to the outcome possibly because of editing errors 20090215T160300: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: I am trying to modify a macro, but my editing makes no difference to the outcome possibly because of editing errors 20090215T160307: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :let me post it 20090215T160307: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: let me post it 20090215T160640: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :Here's the original: http://www.pastebin.ca/1338047 20090215T160640: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: Here's the original: http://www.pastebin.ca/1338047 20090215T160837: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :Here's the edited macro: http://www.pastebin.ca/1338050 20090215T160837: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: Here's the edited macro: http://www.pastebin.ca/1338050 20090215T160956: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :am I doing something wrong? 20090215T160956: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: am I doing something wrong? 20090215T161354: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br QUIT :"Goodbye cruel world." 20090215T161645: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br JOIN :#fiji-devel 20090215T162407: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :mercutio22: don't use macros. They are evil. 20090215T162407: leafw!n=cardona@pacific.mpi-cbg.de: mercutio22: don't use macros. They are evil. 20090215T162419: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :debugging is hell. And they grow complex very quickly. 20090215T162419: leafw!n=cardona@pacific.mpi-cbg.de: debugging is hell. And they grow complex very quickly. 20090215T162459: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :use a scripting language instead: http://pacific.mpi-cbg.de/wiki/index.php/Category:Scripting 20090215T162459: leafw!n=cardona@pacific.mpi-cbg.de: use a scripting language instead: http://pacific.mpi-cbg.de/wiki/index.php/Category:Scripting 20090215T162528: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :javascript is the officially endorsed one by imagej: http://pacific.mpi-cbg.de/wiki/index.php/Javascript_Scripting 20090215T162528: leafw!n=cardona@pacific.mpi-cbg.de: javascript is the officially endorsed one by imagej: http://pacific.mpi-cbg.de/wiki/index.php/Javascript_Scripting 20090215T162551: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :see also: http://rsb.info.nih.gov/ij/developer/javascript.html 20090215T162551: leafw!n=cardona@pacific.mpi-cbg.de: see also: http://rsb.info.nih.gov/ij/developer/javascript.html 20090215T162655: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :there are also examples here: http://rsb.info.nih.gov/ij/macros/js/ 20090215T162655: leafw!n=cardona@pacific.mpi-cbg.de: there are also examples here: http://rsb.info.nih.gov/ij/macros/js/ 20090215T162659: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :leafw> I am a total noob, I am just trying to edit a macro because Wayne wrote me one. I can't do my own, from the bottom up. Not yet at least. I need plenty more study 20090215T162659: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: leafw> I am a total noob, I am just trying to edit a macro because Wayne wrote me one. I can't do my own, from the bottom up. Not yet at least. I need plenty more study 20090215T162817: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :I will learn in time, but can you help get this simple task to work? Its ok if we use a scripting language instead 20090215T162817: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: I will learn in time, but can you help get this simple task to work? Its ok if we use a scripting language instead 20090215T162838: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :Jython, sounds good. I want to learn python 20090215T162838: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: Jython, sounds good. I want to learn python 20090215T163723: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :then read this first: http://pacific.mpi-cbg.de/wiki/index.php/Jython_Scripting 20090215T163723: leafw!n=cardona@pacific.mpi-cbg.de: then read this first: http://pacific.mpi-cbg.de/wiki/index.php/Jython_Scripting 20090215T163728: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :from beginning to end. 20090215T163728: leafw!n=cardona@pacific.mpi-cbg.de: from beginning to end. 20090215T163747: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :open the Plugins -> Scripting -> Jython Interpreter and test along, to get used to it. 20090215T163747: leafw!n=cardona@pacific.mpi-cbg.de: open the Plugins -> Scripting -> Jython Interpreter and test along, to get used to it. 20090215T164142: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :leafw> alright, sounds good. 20090215T164142: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: leafw> alright, sounds good. 20090215T165327: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :leafw> I am afraid my fiji installation is not working any longer: ould not move /usr/lib/fiji//update/retro/backport-util-concurrent-3.1.jar to /usr/lib/fiji//retro/backport-util-concurrent-3.1.jar: No such file or directory 20090215T165327: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: leafw> I am afraid my fiji installation is not working any longer: ould not move /usr/lib/fiji//update/retro/backport-util-concurrent-3.1.jar to /usr/lib/fiji//retro/backport-util-concurrent-3.1.jar: No such file or directory 20090215T165423: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :which OS? 20090215T165423: leafw!n=cardona@pacific.mpi-cbg.de: which OS? 20090215T165510: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :fiji is still quite beta. You could try downloading the most recent release. 20090215T165510: leafw!n=cardona@pacific.mpi-cbg.de: fiji is still quite beta. You could try downloading the most recent release. 20090215T165611: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :Ubuntu Intrepid Ibex.. It used to work alright, I think that happened after I tried to update it via the update item in the menu 20090215T165611: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: Ubuntu Intrepid Ibex.. It used to work alright, I think that happened after I tried to update it via the update item in the menu 20090215T165621: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :yeah, I will try that 20090215T165621: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: yeah, I will try that 20090215T165739: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :leafw> The link to the 64 bit installer seems to be broken: http://pacific.mpi-cbg.de/downloads/apt/binary-amd64/fiji_0.9.4.20081024rc5_amd64.deb 20090215T165739: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: leafw> The link to the 64 bit installer seems to be broken: http://pacific.mpi-cbg.de/downloads/apt/binary-amd64/fiji_0.9.4.20081024rc5_amd64.deb 20090215T165813: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :let me check 20090215T165813: leafw!n=cardona@pacific.mpi-cbg.de: let me check 20090215T165835: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :I will follow the instructions to install from source then 20090215T165835: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: I will follow the instructions to install from source then 20090215T165839: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :http://pacific.mpi-cbg.de/downloads/Luxembourg/fiji-win64-20090116.zip 20090215T165839: leafw!n=cardona@pacific.mpi-cbg.de: http://pacific.mpi-cbg.de/downloads/Luxembourg/fiji-win64-20090116.zip 20090215T165845: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :sorry 20090215T165845: leafw!n=cardona@pacific.mpi-cbg.de: sorry 20090215T165848: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :wrong OS 20090215T165848: leafw!n=cardona@pacific.mpi-cbg.de: wrong OS 20090215T165904: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :http://pacific.mpi-cbg.de/downloads/Luxembourg/fiji-linux64-20090116.tar.bz2 20090215T165904: leafw!n=cardona@pacific.mpi-cbg.de: http://pacific.mpi-cbg.de/downloads/Luxembourg/fiji-linux64-20090116.tar.bz2 20090215T165936: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :don't install the debian package: you may not be able to use the "update fiji" functionality because of permissions problems. 20090215T165936: leafw!n=cardona@pacific.mpi-cbg.de: don't install the debian package: you may not be able to use the "update fiji" functionality because of permissions problems. 20090215T165941: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :i.e. can't write to that folder. 20090215T165941: leafw!n=cardona@pacific.mpi-cbg.de: i.e. can't write to that folder. 20090215T165952: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :just keep fiji in your user folders. 20090215T165952: leafw!n=cardona@pacific.mpi-cbg.de: just keep fiji in your user folders. 20090215T170019: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :leafw> ok. 20090215T170019: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: leafw> ok. 20090215T170223: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :so imageJ won't allow me to use Jython scripting and imageJ will? 20090215T170223: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: so imageJ won't allow me to use Jython scripting and imageJ will? 20090215T170231: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :I mean... 20090215T170231: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: I mean... 20090215T170234: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :Fiji will 20090215T170234: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: Fiji will 20090215T170246: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :is that it? 20090215T170246: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: is that it? 20090215T170307: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :you can use jython in regular imagej if you get the approriate jars in approriate places 20090215T170307: leafw!n=cardona@pacific.mpi-cbg.de: you can use jython in regular imagej if you get the approriate jars in approriate places 20090215T170334: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :I see. Its beter to use Fiji then. 20090215T170334: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: I see. Its beter to use Fiji then. 20090215T170352: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :thejars/jython2.2.1/jython.jar , the plugins/Jython__Interpreter.jar . 20090215T170352: leafw!n=cardona@pacific.mpi-cbg.de: thejars/jython2.2.1/jython.jar , the plugins/Jython__Interpreter.jar . 20090215T170412: *: <== :leafw!n=cardona@pacific.mpi-cbg.de PRIVMSG #fiji-devel :you could put them both in ImageJ plugins folder and it would work ... but this road leads to pain :) 20090215T170412: leafw!n=cardona@pacific.mpi-cbg.de: you could put them both in ImageJ plugins folder and it would work ... but this road leads to pain :) 20090215T170607: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :leafw> got that. It's going to take a while to download... I will be back soon 20090215T170607: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: leafw> got that. It's going to take a while to download... I will be back soon 20090215T174755: *: <== :oosp!n=oosp@wiggle.inf.ed.ac.uk QUIT :"Leaving" 20090215T180913: *: <== :_gl_!n=_gl_@82-37-235-199.cable.ubr06.smal.blueyonder.co.uk JOIN :#fiji-devel 20090215T184916: *: <== :_gl_!n=_gl_@82-37-235-199.cable.ubr06.smal.blueyonder.co.uk QUIT :Remote closed the connection 20090215T191744: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :leafw> I'm back. So if you have some time later can we discuss how to make a script that does the same as that macro? 20090215T191744: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: leafw> I'm back. So if you have some time later can we discuss how to make a script that does the same as that macro? 20090215T192423: *: <== :mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br PRIVMSG #fiji-devel :I started the jython interpreter 20090215T192423: mercutio22!n=htorres@201-1-5-95.dsl.telesp.net.br: I started the jython interpreter 20090215T202606: *: <== :gitte!n=gene099@pD9EB1149.dip0.t-ipconnect.de JOIN :#fiji-devel 20090215T215552: *: <== :gitte!n=gene099@pD9EB1149.dip0.t-ipconnect.de QUIT :Remote closed the connection